- Auto-migrate commands/ to prompts/ on startup
- Warn if hooks/ or tools/ directories contain custom extensions
- Show deprecation warnings in interactive mode with keypress to continue
- Update CHANGELOG and docs with full migration guide
- Create migrations.ts with consolidated migrations
- Move auth migration from AuthStorage.migrateLegacy() to migrations.ts
- Add migrateSessionsFromAgentRoot() to fix misplaced sessions
- Sessions in ~/.pi/agent/*.jsonl are auto-migrated on startup
fixes#320